I work in facilities management for TfL and I've been here 12 years. I've never, never, been issued access to the deepest levels of certain stations. Not even maintenance staff go down there regularly. I asked my supervisor once and got a stare that could freeze hydrogen. He just said 'operational security' and changed the subject.
The thing that got me thinking: we have heating systems listed on the official blueprints for levels that are supposed to be abandoned or decommissioned. Why would you maintain climate control in empty tunnels? And there are regular delivery trucks that access the Underground at night through loading bays near King's Cross - not the usual TfL vehicles, unmarked white vans.
I'm not saying aliens. I'm not saying secret research. But something is down there that they don't want the public knowing about. And I'm pretty confident it's not just old Victorian engineering.